Conceptual
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Primer 3' End Specificity

Mismatches within the last few 3' bases block extension, while 5' mismatches are largely tolerated, so specificity is concentrated at the 3' terminus. Any off-target site with a matching 3' end is a real mispriming risk regardless of overall identity.

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Mismatches within the last few 3' bases block extension, while 5' mismatches are largely tolerated, so specificity is concentrated at the 3' terminus. Any off-target site with a matching 3' end is a real mispriming risk regardless of overall identity.

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