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What You'll Learn
Concepts:
How Measurement Error Attenuates a Correlation Toward Zero
Layered Structure of the Vocal Fold: Cover, Ligament and Body
Colocalization of GWAS and eQTL Signals
Narrowing the ABCC9 Locus with African-Ancestry Pulse Pressure Data
Telling Harmonics from Resonances on a Spectrum
The Analysis Window in a Short-Time Fourier Transform
Fixation: When Only One Allele Is Left in a Species
An Acoustic Analysis Workflow From Recording to Measure Table
Longer Vocal Tracts Lower and Crowd the Formants
Correlation Does Not Imply Causation in Observational Voice Data
Why F_0 Exists Only on Voiced Frames
When Two Communities' Speech Converges, Listener Accuracy Collapses
A Sustained Vowel versus Connected Speech as a Measurement Target
Pulse Pressure as Systolic Minus Diastolic Blood Pressure
Test-Retest Reliability of a Voice Measure
Estimating Formants by Linear Predictive Coding
Aliasing: What Sampling Too Slowly Does to a Signal
The Association Effect Size β as Change per Copy of an Allele
Classifying Point Frameshift Missense and Nonsense Mutations in Molecular Genetics
Sex Differences in Vocal Tract Length Shift the Formants
Why Within-Group Heritability Cannot Explain a Between-Group Difference
Why Sex and Age Dominate Any Model of Voice Pitch
Why Drift Is the Default Explanation for an Allele Frequency Difference
Changing Pitch Without Changing Vowel
Why LD Block Length Reflects Population History
The Vocal Fold Lamina Propria Is Built from the Same Elastin and Collagen
The Bernoulli Effect at the Glottis Pulls the Folds Closed
Reading a Heritability Estimate Together With Its Confidence Interval
Genetic Drift Effects
Recording Conditions That Change an Acoustic Measurement
Hertz versus Semitones as a Scale for Comparing Pitch
Sexual Selection Hypotheses for Human Voice Pitch
A Fixed Human Site Shared with Archaic Hominins
Inferring the Ancestral Allele from an Outgroup Genome
Standard Deviation
Quantitative Traits: Measuring a Trait on a Continuous Scale
Broad-Sense Heritability H^2 versus Narrow-Sense Heritability h^2
An Expression Signal That Lowers ABCC9 in the Adrenal Gland
The Time-Frequency Resolution Trade-Off
Checking Whether a Group Mean Difference Is Even Detectable
Statistical Fine-Mapping: Posterior Inclusion Probabilities and Credible Sets
What Would Be Needed to Prove the Mechanism
How LPC Model Order Creates Formant Errors
Why a Stiffer Artery Produces a Larger Pulse Pressure
Within-Group versus Between-Group Variance in a Measured Trait
How Tongue Height and Advancement Move F1 and F2
Association Signal versus Causal Variant under Linkage Disequilibrium
The Glottal Source Produces a Harmonic Series
Additive Genotype Coding as Allele Dosage 0 1 and 2
The Evidential Bar an Adaptive Hypothesis Has to Clear
Tissue-Specific eQTLs and the GTEx Resource
Loss-of-Function Intolerance Measured by LOEUF
Vowel Height & Backness
Why an Allele Fixed Before Our Species Cannot Explain Variation Today
Measurement Error in an Acoustic Measure
Reducing an F_0 Track to Summary Measures
The Larynx as the Body's Sound Source
The Fourier Transform: A Signal as a Sum of Sinusoids
LD Score Regression for SNP Heritability and Confounding
Reading ABCC9's Constraint Numbers as a Single Argument
Confounding: When Sex, Age or Body Size Explains a Voice Correlation
Founder Effects in a Small Founding Population
How Membrane Potential Controls Vascular Smooth Muscle Tone
Heritability Estimates
Quantisation: Turning a Continuous Waveform Into Integers
Ancestral versus Derived Alleles at a Site
Why Heritability Describes a Population and Not a Person
Twin and Family Designs for Estimating Heritability
Effect Size in Standard Deviation Units in Educational Research
Genetic Correlation r_g Between Two Traits
Cortisol and DHEA Output from the Adrenal Cortex
The Vocal Tract as a Quarter-Wavelength Resonating Tube
Judging an Effect by Comparing It to the Trait's Own Scale
Adrenal Hormone Regulation of Sodium and Potassium
Ecological Fallacy: Reading a Group Average as an Individual Trait
The Decibel as a Logarithmic Ratio
Overlapping Distributions and the Limits of Predicting One Person
GWAS Summary Statistics: What a Study Publishes per Variant
The Sex Difference in Voice Pitch Dwarfs Every Other Known Effect
Population Stratification and Correction with Genotype Principal Components
Why a Genetic Correlation Is Not Evidence of a Causal Path
The Documented Social Cost of Judging People by Their Speech
Why a Deleteriousness Score Is Not a Phenotypic Effect Size
Attenuation: How Noisy Measurement Shrinks a Correlation
Adult Voice Pitch Drifts With Age in Opposite Directions by Sex
Linkage Disequilibrium: D Prime and r^2 between Nearby Variants
Statistical Significance Is Not the Same as Effect Size
Intracellular ATP as the Gating Signal of a K_ATP Channel
Decomposing Trait Variance into Genetic and Environmental Parts
The Vocalis Muscle as the Active Element Inside the Vocal Fold
Estimating F_0 by Autocorrelation
Covariates: Removing Known Effects Before Testing a Variant
Why a Heritability Estimate Changes With Sample and Setting
Synonymous vs Non-synonymous
Most Human Genetic Variation Lies Within Populations, Not Between Them
LD Blocks Recombination Hotspots and Haplotype Structure
Shimmer: Cycle-to-Cycle Variation in Amplitude
Reading a Spectrogram of a Voice
Why Most Sequence Variants Fall Outside Protein-Coding Exons
A Microphone Turns Air Pressure Into a Voltage
Acoustic Features and Fundamental Frequency of Speech
Formant Frequencies
Harmonics-to-Noise Ratio as a Measure of Voice Noise
Jitter: Cycle-to-Cycle Variation in Period
Converting an Effect Size in SD Units Back to Hertz
Ion Channel Gating
Elastin and Collagen as the Load-Bearing Proteins of the Arterial Wall
Pearson Correlation Coefficient
How a Population Bottleneck Reshapes Allele Frequencies
Subglottal Pressure: The Lung Pressure That Drives Phonation
Listeners Judge a Speaker From Learned Speech, Not Anatomy
Reading the Credible Set at the ABCC9 Voice Pitch Locus
Monotone versus Low-Pass Filtering as a Test of Which Cue Carries
Dialect Is Learned From a Speech Community, Not Inherited
Detecting Natural Selection from Genetic Variation
Why Above-Chance Accuracy Does Not Make a Reliable Classifier
The F1-F2 Vowel Space
Three Candidate Mechanisms for One Voice Pitch Locus
The GWAS Per-Variant Regression Test and Effect Size
Multiple Testing Problem in Hypothesis Tests using Bonferroni Correction and Holm-Bonferroni Method
Genome-Wide Significance and the 5 x 10^-8 Threshold
Reverse Causation: Deciding Which Way the Arrow Points
SUR2 and Kir6: The Pore and the Regulator of a K_ATP Channel
How Potassium Permeability Sets the Resting Membrane Potential
Why the Nearest Gene Is Not Automatically the Causal Gene
Polygenic Architecture of Complex Traits and Missing Heritability
Source-Filter Theory: The Buzz and the Tube Are Separate Systems
Trans-Ancestry Fine-Mapping Using Differing LD Structures
How a Paper Argues from a Statistical Hit to a Candidate Mechanism
Minor Allele Frequency and Common versus Rare Variants
CADD as an Integrated Deleteriousness Rank for a Variant
The Myoelastic-Aerodynamic Theory of Phonation
The Phonation Continuum from Breathy to Modal to Creaky
Gene Flow as a Homogenizing Force on Allele Frequencies
Sampling Rate and the Nyquist Limit
Reading Manhattan and Q-Q Plots from a GWAS
The Ratio of Nonsynonymous to Synonymous Substitution as a Test of Selection
SNP Heritability h^2_SNP: the Share Common Variants Explain
Octave Errors in Automatic Pitch Tracking
Androgen Exposure at Puberty Remodels the Larynx
Why Length, Mass and Tension Set the Fundamental Frequency
Turning an Effect Estimate into a P-Value with Its Standard Error
Why Ancestry Inference From a Voice Fails as an Inference
What you will learn
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